Scientific Data Manager and Research Software Engineer in Precision Oncology and Multiomics

vor 4 Wochen


Heidelberg, Baden-Württemberg, Deutschland EMBL Vollzeit

Your role

  • Establish and maintain a FAIR data repository for primary and derived data from INTeRCePT collaborators, utilizing EMBL's advanced IT infrastructure.
  • Import, perform initial quality assurance and quality control, consistency and completeness checks, document, and add metadata to the data.
  • Create the necessary conditions for dataset integration, such as identifier consistency.
  • Support researchers in finding, accessing, and troubleshooting data.
  • Upload data to public repositories, in conjunction with scientific publications, under the guidance of the researchers.
  • Develop interfaces for data visualization and browsing, and perform data transformations to make them suitable for machine learning / AI methods.
  • Adapt and further develop open-source scientific software useful for the above tasks.
  • Engage with scientific data management and research software engineering in the broader scientific community internationally, e.g., by contributing open-source tools and training material.

Key responsibilities

  • Contract duration: until 12/2026
  • Grading: 4, 5, 6 depending on experience and qualifications (monthly salary starting at €3,607 after tax but excl. pension & insurances) + benefits
  • Reference number: HD02682

Requirements

  • A university degree in the natural or life sciences, and experience with biological data analysis. A PhD, and experience in scientific computing are an advantage.
  • A passion for detail, for keeping things well-organized, and for working with others.
  • Knowledge of R and Python: good in at least one, at least basic in the other.
  • You enjoy creating interactive websites using tools such as shiny and quarto.


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